Schoenwolf, G. C.
Atlas of Descriptive Embryology 7th ed.
Prentice Hall 2007.5
300 pp.(P)
ISBN 0-13-158560-6
9,200円
Contents
1. Gametogenesis/ 2. Fertilization/ 3. Worm Development/ 4. Echinoderm Development/ 5. Chordate Development/ 6. Amphibian Development/ 7. Avian Development/ 8. Mammalian Development/ 9. Regeneration/ 10. Human Development/ Credits/ Glossary, Synopsis of Development and Index/ *
Bodmer , R.
Ardiovascular Development
Advances in Developmental Biology
Elsevier 2007.10
454 pp.(H)
ISBN 0-444-53014-2
17,600円
Contents
1. Heart Development in Drosophila/ 2. Morphogenesis of the Vertebrate Heart/ 3. Heart Development and T-box Transcription Factors: Lessons from Avian Embryos Elaine/ 4. Transcriptional Control of Cardiac Boundary Formation/ 5. Signaling Pathways in Embryonic Heart Induction/ 6. Islet1 Progenitors in Developing and Postnatal Heart / 7. Role of MicroRNAs in Cardiovascular Biology/ 8. Divergent Roles of Hedgehog and Fibroblast Growth Factor Signaling in Left-Right Development Judith/ 9. Development of the conduction system: Picking up the pace/ 10. Transcriptional Control of the Cardiac Conduction System/ 11. Genetic dissection of hematopoiesis using Drosophila as a model system/ 12. Vascular Development in the Zebrafish / 13. Development and function of the epicardium/ 14. Genetics of transcription factor mutations/ 15. Human genetics of congenital heart disease/ Index/ *
van Heyningen, V. & Hill, R. ed.
Long-Range Control of Gene Expression
Academic Press 2008.3
416 pp.(H)
ISBN 0-12-373881-4
17,600円
Contents
1.Chromatin Structure and the Regulation of Gene Expression: The Lessons of Pev in Drosophila/ 2.Polycomb Group Proteins and Long-Range Gene Regulation/ 3.Evolution of cis-Regulatory Sequences in Drosophila/ 4.Beta Globin Regulation and Long-Range Interactions/ 5.Long-Range Regulation of -globin Gene Expression/ 6. Global Control Regions and Regulatory Landscapes in Vertebrate Development and Evolution/ 7.Regulation of Imprinting in Clusters: Noncoding RNAs Versus Insulators/ 8.Genomic Imprinting and Imprinting Defects in Humans/ 9.Epigenetic Gene Regulation in Cancer/ 10.Genomic Identification of Regulatory Elements by Evolutionary Sequence/ 11.Comparison and Functional Analysis Regulatory Variation and Evolution and Implications for Disease Organization of Conserved Elements/ 12.Near Key Developmental Regulators in Vertebrate Genomes/ 13.Long-Range Gene Control and Genetic Disease/ *
Stillman, B. & Stewart, D. ed.
Regulatory RNAs
制御RNA
(Cold Spring Harbor Symposia on Quantitative Biology LXXI)
Cold Spring Harbor Laboratory 2007.6
574 pp. (P)
ISBN 0-87969-818-7
18,200円
Contents
* 本書には制御RNAをテーマにRNA研究の最新成果がまとめられています。RNA干渉や転写調節と翻訳調節、RNA編集、生物の反応回路やエピジェネティックな過程におけるRNAの役割などがテーマに選ばれています。最新のRNAの大規模な分析技術や、発生や癌における小さなRNAの役割なども論じており、この比較的新しい分子生物学の重要分野の現在を捉えています。
1.INTRODUCTION/ 2.MECHANISM AND BIOLOGY OF RNAi/ 3.GENOME-WIDE APPROACHES/ 4.SMALL RNAs IN DEVELOPMENT/ 5.TELOMERES & CANCER/ 6.END REGULATION OF TRANSCRIPTS/ 7.RNPs AND RNA EDITING/ 8.BIOLOGY OF SHORT RNAs/ 9.CONTROL OF GENE EXPRESSION BY NON-CODING RNAs/ 10.HETEROCHROMATIN/ 11.QUALITY CONTROL, MESSENGER RNA TURNOVER, AND TRANSLATIONAL CONTROL/ SUMMARY/ INDEXES/
* Regulatory RNAs was the theme of the 71st annual Cold Spring Harbor Symposium on Quantitative Biology, where scientists from around the world presented the latest advances in the biology of RNAs, including RNA interference, transcriptional and translational control, RNA editing, and the role of RNAs in biological circuits and epigenetic events. Investigators discussed the latest technologies aimed at large-scale characterization of RNAs, as well as the roles of small RNAs in development and cancer. This volume is a timely survey of this important new area of molecular biology. *
Bergman, Nicholas H. ed.
Comparative Genomics Vol. 1
Humana Press 2007.7
580 pp. (H)
ISBN 1-58829-693-8
19,800円
Contents
Section I-Genome Visualization and Annotation: 1. Comparative analysis and visualization of genomic sequences using VISTA Browser and associated computational tools Inna Dubchak/ 2. Comparative Genomic Analysis Using the UCSC Genome Browser/ 3. Comparative Genome Analysis in the Integrated Microbial Genomes (IMG) System/ 4. WebACT: An Online Genome Comparison Suite/ 5. GenColors: Annotation and Comparative Genomics of Prokaryotes made easy/ 6. Comparative Microbial Genome Visualization Using GenomeViz/ 7. BugView: A Tool for Genome Visualization and Comparison/ 8. CGAS: Comparative Genome Annotation System/ Section II-Sequence Alignments: 9. BLAST Quick Start: An Example-driven Web-based BLAST Tutorial/ 10. Psi-BLAST Tutorial/ 11. Organizing and Updating Whole Genome BLAST Searches with REHAB/ 12. Alignment of Genomic Sequences Using DIALIGN/ 13. An Introduction to the Lagan Alignment Toolkit/ 14. Aligning Multiple Whole Genomes with Mercator and Mavid Colin N. Dewey/ 15. Mulan: Multiple-Sequence Alignment to Predict Functional Elements in Genomic Sequences / 16. Improving Pairwise Sequence Alignment between Distantly Related Proteins/ Section III-Identification of Conserved Sequences and Biases in Codon Usage: 17. Discovering Sequence Motifs/ 18. Discovery of conserved motifs in promoters of orthologous genes in prokaryotes/ 19. PhyME: A Software Tool for Finding Motifs in Sets of Orthologous Sequences/ 20. Comparative Genomics-based Orthologous Promoter Analysis using the DoOP database and the DoOPSearch web tool/ 21. Discovery of motifs in promoters of co-regulated genes/ 22. Fastcompare: A non-alignment approach for genome-scale discovery of DNA and mRNA regulatory elements using network-level conservation/ 23. Phylogenetic footprinting to find functional DNA elements/ 24. Detecting Regulatory Sites using PhyloGibbs/ 25. Using the Gibbs Motif Sampler for Phylogenetic Footprinting/ 26. Web-based Identification of Evolutionary Conserved DNA cis-regulatory elements/ 27. Exploring conservation of transcription factor binding sites with CONREAL/ 28. Computational and Statistical Methodologies for Orfeome Primary Structure Analysis/ Section IV-Identification and Structural Characterization of non-coding RNAs: 29. Comparative analysis of RNA genes: the caRNAc software/ 30. Efficient annotation of bacterial genomes for small, non-coding RNAs using the integrative computational tool sRNAPredict2/ 31. Methods for Multiple Alignment and Consensus Structure Prediction of RNAs Implemented in MARNA/ 32. Prediction of structural noncoding RNAs with RNAz/ 33. RNA Consensus Structure Prediction with RNAalifold/
* Comparative Genomics, Volume 1, provides a collection of robust protocols for molecular biologists beginning to use comparative genomic analysis tools in a variety of areas. Volume I contains the first four of seven sections. *
Bergman, N. H. ed.
Comparative Genomics Vol. 2
Humana Press 2008.
434 pp.(H)
ISBN 1-934115-37-1
13,200円
Contents
Section V: Comparative Analysis of Domain and Protein Families: 1. Computational Prediction of Domain Interactions/ 2. DomainTeam: Synteny of domains is a new approach in comparative genomics/ 3. Inference of gene function based on gene fusion events: the Rosetta Stone method/ 4. Pfam: A domain-centric method for analyzing proteins and proteomes/ 5. InterPro and InterProScan-Tools for Protein Sequence Classification and Comparison/ 6. Gene Annotation and Pathway Mapping in KEGG/ Section VI: Orthologs, Synteny, and Genome Evolution: 7. Ortholog Detection using the Smallest Distance Algorithm/ 8. Finding Conserved Gene Order Across Multiple Genomes/ 9. Analysis of Genome Rearrangement by Block-Interchanges/ 10. Analyzing Patterns of microbial evolution using the Mauve Genome Alignment System/ 11. Visualization of syntenic relationships with SynBrowse/ 12. GECKO and GHOSTFAM: Rigorous and Efficient Gene Cluster Detection in Prokaryotic Genomes/ Section VII: Experimental Analysis of Whole Genomes-Analysis of Copy Number and Sequence Polymorphisms: 13. Genome-wide copy number analysis on GeneChip platform using CNAG 2.0 software/ 14. Oligonucleotide array comparative genomic hybridization/ 15. Studying Bacterial Genome Dynamics Using Microarray-Based Comparative Genomic Hybridization/ 16. CGH analysis using the CGHAnalyzer/ 17. Microarray-based Approach for Genome-Wide Survey of Nucleotide Polymorphisms/ 18. High-Throughput Genotyping of Single Nucleotide Polymorphisms with High Sensitivity/ 19. Single nucleotide polymorphism (SNP) mapping array assay/ 20. Molecular Inversion Probe Assays/ 21. novoSNP: variant detection and sequence annotation in resequencing projects/ 22. Rapid Identification of Single Nucleotide Substitutions Using SeqDoc/ 23. SNPHunter: A Versatile Web-Based Tool for Acquiring and Managing Single Nucleotide Polymorphisms/ 24. Identification of Disease Genes: An Example-driven Web-based Tutorial/ 25. Variable number tandem repeat typing of bacteria/ 26. Fluorescent amplified fragment length polymorphism (FAFLP) genotyping of bacterial species/ 27. FLP-mapping: A universal, cost-effective, and automatable method for gene mapping/ Index/ *
Balding, D.J. et al. ed.
Handbook of Statistical Genetics 3rd ed.
統計遺伝学ハンドブック 第３版
John Wiley & Sons 2007.10
1616 pp. (H)
ISBN 0-470-05830-7
41,000円
Contents
List of contributors / Editor's Preface to the Third Edition / Glossary of Terms / Abbreviations and Acronyms / 1.Chromosome Maps / 2.Statistical Significance in Biological Sequence / 3.Bayesian Methods in Biological Sequence Analysis / 4.Statistical Approaches in Eukaryotic Gene Prediction / 5.Comparative Genomics / 6.Analysis of Microarray Gene Expression Data / 7.Inferences from microarray data / 8.Bayesian methods for microarray data / 9.eQTL analyses / 10.Protein Structure / 11.Metabonomics / 12.Adaptive Molecular Evolution / 13.Genome Evolution / 14.Probabilistic Models for the Study of Protein Evolution / 15.Application of the Likelihood Function in Phylogenetic / 16.Phylogenetics: Parsimony, Networks and Distances / 17.Evolutionary Quantitative Genetics / 18.Quantitative Trait Loci in Inbred Lines / 19.Mapping Quantitative Trait Loci Outbred Pedigrees / 20.Inferences from Mixed Models in Quantitative Genetics / 21.Marker-Assisted Selection and Introgression / 22.Mathematical Models in Population Genetics / 23.Inference, simulation and enumeration of pedigrees and genealogies / 24.Graphical modelling in genetics / 25.Coalescent Theory / Inference Under the Coalescent / 26.Linkage Disequilibrium, recombination and selection / 27.Inferences from Spatial Population Genetics / 28.Analysis of Population Subdivision / 29.Conservation Genetics / 30.Human population genetics/history / 31.Epidemiology and Genetic Epidemiology / 32.Linkage Analysis / Nonparametric Linkage / 33.Admixture mapping and population structure in association studies / 34.Population Association / 35.Genome-wide association studies / 36.Family-based association studies / 37.Cancer genetics / 38.Epigenetics / 39.Ethics / 40.Insurance / 41.Forensics / Reference Author Index / Subject Index / *
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